machine learning AMBER A toolkit for designing high-performance neural networks CROTON CRISPR Outcomes Through cONvolutional neural networks DARTS DNN Deep-learning augmented RNA-seq analysis of transcript splicing EMGNN Explainable Multilayerd Graph Neural Network statistical analysis CLAM CLIP-seq analysis of multi-mapped reads DARTS BHT Bayesian hypothesis testing for transcript splicing JEMM Joint-exon measurement model